High-Throughput Screening Hero Background

Application

High-Throughput Screening with Droplet Microfluidics

Onyx Platform

From droplets to hits – one integrated workflow

Onyx and Styx form a complete droplet microfluidics solution for high-throughput screening. Encapsulate your variant library, run your assay at scale, and sort enriched hits – all within a single, open ecosystem built around your assay, your conditions, and your lab.

Styx Platform

HIGH-THROUGHPUT SCREENING Workflow

Millions of assays generated and sorted per session – processes in hours that would take days or weeks by plate-based methods.

01
Onyx Platform

Sample

Encapsulate cells, nucleic acids, molecules (e.g., plasmids).

Cells Cells

Nuclei Nuclei

Nucleic acids Nucleic acids

Sample encapsulation

Generate monodisperse water-in-oil droplets reliably at scale. Monitor quality, occupancy, and uniformity in real time.

Sample Encapsulation Step
Optional step

Reagent Addition

Introduce reagents or objects precisely. Add substrates or reagents post-encapsulation via pico-injection or merging.

Injection

Introduce homogenous solutions (reagents, substrates)

Reagent Injection Step

Merging

Introduce distinct objects (cells, beads, particles)

Droplet Merging Step

Technical Note: Addition of Reagents into Microfluidic Droplets

02

Functional assay

Droplets are incubated to let the reaction proceed – cell growth, enzyme activity, protein secretion, or reporter expression. Assays are designed to induce fluorescence in droplets containing the desired targets, enabling downstream sorting by Styx. Screening is based on target activity in its biological context, not just binding affinity.

Substrate Conversion Assay

Substrate
Conversion

Reporter Gene Expression Assay

Reporter Gene
Expression

Cell Proliferation Assay

Cell
Proliferation

Cell Killing Assay

Cell
Killing

Substrate Degradation Assay

Substrate
Degradation

Downstream Signaling Assay

Downstream
Signaling

Ligand Binding Assay

Ligand
Binding

Molecule Interaction Assay

Molecule
Interaction

Activity Inhibition Assay

Activity
Inhibition

03
Styx Platform

Droplet sorting

Reinject into Styx and sort at up to 1,000 Hz across four fluorescence channels. Define your target population with polygonal gating, multiparametric selection, and real-time sort verification.

Droplet Sorting Step

Recovered positive hits

Recover enriched hits for sequencing, validation, or the next round of engineering.

Recovered Positive Hits

Applications

Strain Engineering Application

STRAIN ENGINEERING

Conventional screening methods capture a fraction of the variant space – leaving most of the library untested. Onyx and Styx let you screen millions of microbial variants in a single session, identifying top performers by enzyme activity, metabolite production, or growth rate before committing to further development rounds.

Protein Engineering Application

PROTEIN ENGINEERING

Binding affinity alone does not predict functional performance. Droplet-based functional assays let you screen large protein libraries based on what your variants actually do in their biological context (activity, selectivity, stability), accelerating identification of the candidates worth taking forward.

Custom Screening Workflows Application

CUSTOM SCREENING WORKFLOWS

From early assay development to high-throughput selection – Onyx and Styx support every stage. Bring your own chips, your own buffers, your own assay conditions. The platform adapts to your biology.

Two platforms Full workflow

Onyx Platform

Generate &
Manipulate

  • Monodisperse droplet generation – 10 µL to 50 mL sample volume
  • High‑speed microscopy: up to 4,000 fps – real‑time occupancy, quality, and uniformity analysis
  • Pico‑injection and droplet merging – integrated forcefield generator
  • 4 independent syringe pumps – 0.5 µL/h to 0.5 L/h flow range
  • No chip lock‑in – compatible with commercial and custom PDMS chips
  • Compatible with any optically transparent buffer or media
  • Embedded UI software – full platform control and real‑time monitoring; no installation required
  • Compact and mobile – operates in LAF hoods, cold rooms, clean rooms, and anoxic chambers
Styx Platform

Sort &
Enrich

  • Sorting rate: up to 1,000 Hz
  • 4 lasers: 405 / 488 / 561 / 637 nm
  • 4 independent fluorescence detection channels
  • Multiparametric FADS: polygonal gating, subgating, signal duration, mean/peak sorting
  • Dual high‑speed microscopy (1080p) – sort junction and outlet imaging
  • Integrated high-voltage generator – 2 independent channels
  • No chip lock‑in – compatible with commercial and custom PDMS chips
  • Embedded UI software – intuitive sorting control, real‑time bleedthrough correction, and sort verification; no installation required

In applications like cell line development, maintaining genetic consistency requires each line to originate from a single-cell progenitor. However, droplets with selected cells are typically collected in bulk, complicating single-cell isolation.

To overcome this challenge, we've partnered with Seed Biosciences to enable precise transfer of selected cells from droplets into microwell plates for individual cultivation.

Download PDF
Seed Biosciences Partnership for Single-Cell Isolation

Speak to you soon!

We’ve received Your contact information, and our expert is on the way getting back to You. Expect to hear from us soon!

Talk to our team

We will help you match the workflow to your assay, your samples, and your throughput goals.

This site is protected by reCAPTCHA and the Google Privacy Policy and Terms of Service apply.